PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A08G1061

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 253aa MW: 28911.3 Da PI: 6.5306

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A08G1061	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.2	3.8e-18	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd l+ +v+ +G g+W+++ar g++R++k+c++rw++yl Gh_A08G1061 13 KGPWTEEEDYMLKTYVNVHGEGSWNSVARLSGLKRSGKSCRLRWLNYL 60 79********************************************97 PP
2	Myb_DNA-binding	46.5	8.8e-15	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ + +E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++ Gh_A08G1061 66 RGNISLQEQLLILQLHSRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 109 788899**************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.318	8	64	IPR017930	Myb domain
SuperFamily	SSF46689	1.68E-30	10	107	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-15	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-16	13	60	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-21	14	67	IPR009057	Homeodomain-like
CDD	cd00167	9.93E-11	15	60	No hit	No description
SMART	SM00717	4.0E-13	65	113	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	17.684	65	115	IPR017930	Myb domain
Pfam	PF00249	1.2E-13	66	109	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-21	68	113	IPR009057	Homeodomain-like
CDD	cd00167	3.85E-6	86	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MTPQSKEDMD VRKGPWTEEE DYMLKTYVNV HGEGSWNSVA RLSGLKRSGK SCRLRWLNYL 60 RPEVKRGNIS LQEQLLILQL HSRWGNRWSK IAQQLPGRTD NEIKNYWRTR VLKQAKQLKC 120 DVNSQEFRDT MRCVWIPRLI ERICASSGSP SAQPSTAYEK TSLLPALSGT SSDSQDAELS 180 SVSDLTDCYN PPSNSNNPNS LQNGRGLWSE NLGGTWNIED GVGFQATEGG ESMESVWNEE 240 NIWFLRQQLY DMI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	9e-25	10	107	24	120	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3421	0.0	ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012475006.1	1e-168	PREDICTED: transcription factor MYB108-like
Swissprot	Q9LDE1	3e-68	MY108_ARATH; Transcription factor MYB108
TrEMBL	A0A0D2QXN9	1e-168	A0A0D2QXN9_G
STRING	POPTR_0002s19250.1	4e-95	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	6e-72	myb domain protein 78