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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A08G1061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 28911.3 Da PI: 6.5306 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.2 | 3.8e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd l+ +v+ +G g+W+++ar g++R++k+c++rw++yl Gh_A08G1061 13 KGPWTEEEDYMLKTYVNVHGEGSWNSVARLSGLKRSGKSCRLRWLNYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.5 | 8.8e-15 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ + +E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++ Gh_A08G1061 66 RGNISLQEQLLILQLHSRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 109 788899****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.318 | 8 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.68E-30 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-15 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.93E-11 | 15 | 60 | No hit | No description |
SMART | SM00717 | 4.0E-13 | 65 | 113 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.684 | 65 | 115 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.2E-13 | 66 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-21 | 68 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.85E-6 | 86 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MTPQSKEDMD VRKGPWTEEE DYMLKTYVNV HGEGSWNSVA RLSGLKRSGK SCRLRWLNYL 60 RPEVKRGNIS LQEQLLILQL HSRWGNRWSK IAQQLPGRTD NEIKNYWRTR VLKQAKQLKC 120 DVNSQEFRDT MRCVWIPRLI ERICASSGSP SAQPSTAYEK TSLLPALSGT SSDSQDAELS 180 SVSDLTDCYN PPSNSNNPNS LQNGRGLWSE NLGGTWNIED GVGFQATEGG ESMESVWNEE 240 NIWFLRQQLY DMI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-25 | 10 | 107 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.3421 | 0.0 | ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012475006.1 | 1e-168 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9LDE1 | 3e-68 | MY108_ARATH; Transcription factor MYB108 | ||||
TrEMBL | A0A0D2QXN9 | 1e-168 | A0A0D2QXN9_G | ||||
STRING | POPTR_0002s19250.1 | 4e-95 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 6e-72 | myb domain protein 78 |